Fish maintenance and dissection of tissues
Wild type (iCab) and photolyase mutant medaka (Oryzias latipes) were maintained in the fish facility of the Institute of Biological and Chemical Systems, Biological Information Processing (IBCS-BIP) at…
Category: 5. Biology
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Computationally unmasking each fatty acyl C=C position in complex lipids by routine LC-MS/MS lipidomics
Cell culture
The murine RAW264.7 cell line was obtained from the American Type Culture Collection (ATCC #TIB-71). RAW264.7 cells were cultured as described elsewhere14 in complete DMEM (containing 1% v/v P/S, 10% v/v FBS, and 1% v/v glutamine) in…
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Ligand binding and partial characterization of sex-specifically expressed lipocalins of submandibular and lacrimal glands of Syrian hamsters
Purification of natural MSP and natural FLP from SMG and LG tissues of Syrian hamsters
Natural MSP was purified from SMG of adult male hamsters wherein it comprises approximately 40% of the total soluble proteins of SMG1,3,5,6. Since ovariectomy…
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Author Correction: Plants interfere with non-self recognition of a phytopathogenic fungus via proline accumulation to facilitate mycovirus transmission
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate…
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Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize
Quantification of functional cis-variation
To focus on genetic differences affecting TF binding in cis, we quantified TF footprints (defined as the area significantly covered by MOA-seq reads) specific to each haplotype in F1 hybrids with a shared…
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Oral respiration modulates sensory and cognitive brain potentials differently than nasal respiration
Pins, D. & Ffytche, D. The neural correlates of conscious vision. Cereb. Cortex. 13, 461–474 (2003).
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Railo, H., Koivisto, M. & Revonsuo, A. Tracking the processes behind…
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Targeting oncofetal fibronectin and neuropilin-1 in solid tumors with PL2 peptide
Materials
Phosphate-buffered saline (PBS) was purchased from Lonza (Verviers, Belgium). K3[Fe(CN)6], HCl, isopropanol, Triton-X, Tween-20, CHCl3, MeOH, Isopropyl β-D-1-thiogalactopyranoside (IPTG), and dimethylformamide (DMF) were purchased from…
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Prompt-based bioinformatics: a new interface for multi-omics analysis
Auffarth, B. Generative AI with LangChain: Build Large Language Model (LLM) Apps with Python, ChatGPT, and other LLMs (Packt Publishing, 2023).
Sahoo, P. et al. A systematic survey of prompt engineering in large language models: Techniques and…
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Polyphasic characterization and mating type allele distribution of Monilinia laxa in Iranian stone fruit orchards
Sample collection and fungus isolation
Samples were collected from infected trees with typical brown rot disease symptoms from the spring of 2018 to the summer of 2022. At the journey’s end, 565 samples were collected with the permission of the…
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Quantifying coral reef–ocean interactions is critical for predicting reef futures under climate change
Quantifying coral reef–ocean interactions is critical for predicting reef futures under climate change
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